Shin Megami Tensei V: Vengeance contains 60 Amalgams across both of the routes combined, obtaining all 50 of them in 1 route is required for the Guardian of Glory trophy.
You will need to pick up all collectibles before the final boss as you go through the story. As soon as you beat the final boss there is no free roam and you will have to revert to an older save or collect them again in New Game+. So be sure to keep a Manual Save before the final boss. This can be reloaded after the story. From there you can still free-roam and grab all collectibles.
Minato
Mita
Amalgam – 1
By taking the Magtsu Rail to the above area keep going left and it on top of a destroyed building.
Shiba
Amalgam – 2
On top of the overpass above the last Miman.
Hamamatsucho
Amalgam – 3
In the corner of the building on the left side, with 2 platforms leading to it.
Amalgam – 4
Directly to the south of the last Miman drop back down to the stairs and climb back up to reach it.
Shiba Park
Amalgam – 5
This is on top of the building above the last Miman but to get here you will need to take the west patch up the platforms after defeating Hydra.
East Azabu
Amalgam – 6
Use the Search point in front of the Demon Statue to reveal a Magatsu Rail that will take you to an area above follow it to the next Magatsu Rail to find the Amalgam.
Akabanebashi
Amalgam – 7
Behind the Bridge in the mermaid pond after defeating Pazazu.
Kamiyacho
Amalgam – 8
Go northwest outside the building and is located at the very end of the field with the Bicorn running around.
West Shinbashi
Amalgam – 9
East of the Abscess, it is located at the very top of a broken building toward the edge of the map.
Amalgam – 10
Go south from the previous Miman and it will be located on top of a platform at the very edge of the cliff.
Nakadacho
Amalgam – 11
Go up the Sand Dune to the right of the Diet Building to get on the roof it will be sitting on the edge.
Odaiba
Amalgam – 12
Located Southeast of the Bethel Egypt Leyline Fount ontop of the building.
Tokyo Bay Bridge
Amalgam – 13
Located next to where you Fight Seth on the other side of the Highway.
Amalgam – 14
Located south of the platform in the middle of the bridge behind a pillar.
Shinagawa
Tennozu Isle
Amalgam – 15
Northwest from the last Miman just off the construction site to the Platform next to the building.
Shinagawa Pier
Amalgam – 16
Located south of the Leyline Fount there will be a Search Point that reveals a Magatsu Rail that will take you to an area above.
Amalgam – 17
Keep going up to the very end of the railway tracks and it is located there.
Container Yard
Amalgam – 18
It will be located on top of the shipping containers at the end of the path.
Amalgam – 19
Go north of the Magatsu Rail and you will have to jump across a few Containers to reach it.
Konan 3rd Block
Amalgam – 20
Located on the Bridge at the end of the North Side you can reach here by following the the path after the next Miman.
Konan 4th Block
Amalgam – 21
Keep following the path along and it is located to east on a hill.
Konan 2nd Block
Amalgam – 22
On the roof of the Parking Garage east of the Leyline Fount.
Amalgam – 23
After getting to the other side go underneath the rubble next to the building it is located at the very end.
Fairy Village
Amalgam – 24
Follow the southwest path in North Shinagawa to the end and jump off the right side.
South Shinagawa
Amalgam – 25
South of the Leyline fount across the river on the top of the hill you can get there by following the path around.
Chiyoda (Canon of Creation 3rd area)
Sukibayashi
Amalgam – 26
It is located on a building Northwest of the Leyline Fount.
Kanda
Amalgam – 27
Located behind the previous Abscess on the other side of the rock.
Yurakucho
Amalgam – 28
Located at the very edge of the highway once you are back in the first area.
Awajicho
Amalgam – 29
Located behind the slanted building on a ledge.
Iwamoto
Amalgam – 30
Located at the very end of the Railway track before going into the next area.
Akihabara
Amalgam – 31
Located above the previous Miman on the roof.
Kanda Bridge
Amalgam – 32
Located on top of a ledge under the bridge you can get here by climbing up a rock.
Amalgam – 33
At the very Southeast end above Miman – 42.
Ochanomizu
Amalgam – 34
East from the Leyline Fount at the top of the area on a cliff.
Shinjuku (Canon of Vengeance 3rd area)
Shinjuku Gyoen
Amalgam – 35
Keep going past the previous Miman to the top of the hill and there will be a Magatsu Rail that will take you to a slope that takes you down it.
Sendagaya
Amalgam – 36
Once you reach the Railway tracks and highway go down the very left Highway and it will be located right up the back.
Amalgam – 37
Located in the area to the south on top of the bridge
Yoyogi
Amalgam – 38
From the last Miman go back outside and climb the collapsed building to the left it will located on the top at the end.
Amalgam – 39
Keep going past the Demon Statue down the slope and onto the building at the bottom where it is located.
Yotsuya
Amalgam – 40
go up the 2 platforms next to the middle rock which is located on the top right at the end.
Shinjuku 3rd Block
Amalgam – 41
Located on the very top of the Parking garage in the area Northwest of the Leyline Fount you can get there by taking the Magatsu Rail down the west path opposite the Parking Garage.
Kabukicho
Amalgam – 42
It is Located above the last Miman to get there go right from the Stadium in the middle of the area and there are 2 buildings south of it with platforms you can climb to get to this area.
Amalgam – 43
It is located on the roof of the Stadium, there is a Search Point in the middle of the First floor that will reveal a Magatsu Rail that takes you there, then jump across the platform to the other side of the roof.
Shinjuku 2nd Block
Amalgam – 44
There is a Search Point that reveals a Magatsu Rail Southwest of the Leyline Fount down the second furthest road North that will take you to an area above with it being at the very end.
Taito
Ueno
Amalgam – 45
Located on a building Southwest of the Demon statue on a building you can reach here by going up a broken wall on the South side of the building.
Iriya
Amalgam – 46
Keep following the path to the east dead-end.
Ueno Park
Amalgam – 47
On the same building as the previous Miman drop down a level.
Amalgam – 48
Located West of the Leyline Fount, south of the Abbadon in the corner.
Okachimachi
Amalgam – 49
Go south from the Shinobazu Pond Leyline Fount off the cliff and go west underneath the railway tracks till you reach a hole in the building follow it around onto the railway tracks, and follow the patch onto the back of the building.
Amalgam – 50
Jump off the railroad tracks to the south and land on the rock where it is located.
Shinobazu Pond
Amalgam – 51
It is located in the pond to the east of the previous Miman.
Kuramae
Amalgam – 52
West of the bottom Magatsu Rail you will have to jump off the mountain onto the area below.
Amalgam – 53
Climb up the 5 platforms down the same alleyway next to the building at the start.
Komagata
Amalgam – 54
Once you reach the area with the Magatsu Rail on the edge jump down to the block below.
Amalgam – 55
You can see this looking out from the very top to the west jump off onto the platforms below to reach it.
Motoasakusa
Amalgam – 56
At the very top of the hill next to Fionn mac Cumhaill.
Amalgam – 57
Located on the building north of the cliff you can jump here from the edge.
Amalgam – 58
Located south of the Miman on top of the next building.
Asakusa
Amalgam – 59
Located Southeast of the previous Miman on a block.
Amalgam – 60
Northeast from the Demon Statue there is a way out underneath the Bridge progress North all the way to the edge of the mountain.
For all other collectible types refer to SHIN MEGAMI TENSEI V: Vengeance Collectibles.
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